.. _msmbuilder:
MSMBuilder
==========
.. raw:: html
Statistical models for Biomolecular Dynamics
MSMBuilder is an application and python library. It builds
statistical models for high-dimensional time-series. The particular focus
of the package is on the analysis of atomistic simulations of biomolecular
dynamics such as protein folding and conformational change.
To get started via `Anaconda Python `_,
use::
conda install -c omnia msmbuilder
MSMBuilder includes algorithms for constructing dynamical models:
- :ref:`featurization`
- :ref:`decomposition`
- :ref:`cluster`
- :ref:`msm`
- :ref:`hmm`
- :ref:`ratematrix`
As well as methods for analysis and validation of the models:
- :ref:`gmrq`
- :ref:`tpt`
New users should check out:
- :ref:`background`
- :ref:`installation`
- :ref:`examples`
- :ref:`faq`
MSMBuilder is most effective as a library. Intermediate users should
familiarize themselves with:
- :ref:`apipatterns`
- :ref:`persistence`
- :ref:`changelog`
MSMBuilder is developed by primarily by researchers at Stanford University,
and we welcome contributions. The development all takes place on `Github
`_. MSMBuilder is licensed under
the GNU LGPL (v2.1 or later).
.. toctree::
:maxdepth: 2
:hidden:
background
installation
examples/index
featurization
decomposition
cluster
msm
gmrq
tpt
ratematrix
hmm
persistence
apipatterns
plugins
faq
changelog
.. vim: tw=75