Changelog¶

v0.2.0 (September 15, 2016)¶

We’re pleased to announce the release of MSMExplorer v0.2.0. The focus of this release is improving plotting reproducibility and utilities. There is also a major bugfix for plot_chord and plot_free_energy. We encourage all users to update to v0.2.0.

API Changes¶

darkslategrey has been renamed to carbon (#41).
plot_free_energy now supports a random_state option (#40)

New Features¶

example_datasets has been added. This allows example datasets to be pulled from the msmb_data package (#41).
make_colormap has been added in msmexplorer.utils. It creates a linear colormap from a color palette (#40).
msme_colors has been added in msmexplorer.utils. It allows any non-native plotting functions to handle MSMExplorer color strings (#40).

Improvements¶

Test coverage is greatly improved (#43)
plot_free_energy now produces correct 1-D free energy plots (#43).
extract_palette is now more robust (#40).
Improve example reproducibility (#40)
Fix path vertices problem in plot_chord (#38).

v0.1.0 (August 30, 2016)¶

This is the first stable version of MSMExplorer

New Features¶

Clustering plots: plot_voronoi
MSM plots: plot_pop_resids, plot_msm_network, plot_timescales
Projection plots: plot_free_energy, plot_histogram
TPT plots: plot_tpaths
Misc. plots: plot_chord, plot_trace