.. _api_ref:

.. currentmodule:: msmexplorer

API reference
=============

Cluster plots
-------------

.. autosummary::
    :toctree: generated/

    plot_voronoi


MSM plots
---------

.. autosummary::
    :toctree: generated/

    plot_pop_resids
    plot_msm_network
    plot_timescales

Projection plots
----------------

.. autosummary::
    :toctree: generated/

    plot_free_energy
    plot_histogram

TPT plots
---------

.. autosummary::
    :toctree: generated/

    plot_tpaths

Miscellaneous plots
-------------------

.. autosummary::
    :toctree: generated/

    plot_chord
    plot_stackdist
    plot_trace

Utilities
-------------------

.. autosummary::
    :toctree: generated/

    utils.extract_palette
    utils.make_colormap
    utils.msme_colors