MSMExplorer: data visualizations for biomolecular dynamics
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MSMExplorer is a Python visualization library for statistical models of
biomolecular dynamics. It provides a high-level interface for drawing
attractive statistical graphics with `MSMBuilder <http://msmbuilder.org>`_.

To get started with MSMExplorer, please refer to the
:ref:`installation page <installing>`. You may also want to browse the
:ref:`example gallery <example_gallery>` to get a sense for what you can do
with MSMExplorer and then check out the :ref:`notebooks <notebooks>` and
:ref:`API reference <api_ref>` to find out how.

To cite MSMExplorer, please use the following reference:

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  @article{msmexplorer,
    doi = {10.21105/joss.00188},
    url = {https://doi.org/10.21105%2Fjoss.00188},
    year  = {2017},
    month = {apr},
    publisher = {The Open Journal},
    volume = {2},
    number = {12},
    author = {Carlos X. Hern{\'{a}}ndez and Matthew P. Harrigan and Mohammad M. Sultan and Vijay S. Pande},
    title = {{MSMExplorer}: Data Visualizations for Biomolecular Dynamics},
    journal = {The Journal of Open Source Software}
  }

To see the code or report a bug, please visit the `github repository
<https://github.com/msmexplorer/msmexplorer>`_.


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   colors
   changelog
   installing
   contributing
   papers

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.. Indices and tables
.. ==================
..
.. * :ref:`genindex`
.. * :ref:`modindex`
.. * :ref:`search`