Changelog

v3.2 (April 14, 2015)

  • tICA ignores too-short trajectories durring fitting instead of raising an exception
  • New methods for sampling from MSM models
  • Datasets can be opened in “append” mode
  • Compatibility with sklearn 0.16
  • utils.dump saves using the pickle protocol. utils.load is backwards compatible.
  • The command line flag for featurizers –out is deprecated. Use –transformed instead. This is consistent with other command-line commands.
  • Bug fixes

v3.1 (Feb 27, 2015)

  • Numerous improvements to ContinuousTimeMSM optimization
  • Switch ContinuousTimeMSM.score to transmat-style GMRQ
  • New example dataset with Muller potential
  • Assorted bug fixes in the command line layer

v3.0.1 (January 9, 2015)

  • Fix missing file on PyPI.

v3.0.0 (January 9, 2015)

MSMBuilder 3.0 is a complete rewrite of our previous work. The focus is on power and extensibility, with a much wider class of estimators and models supported throughout the codebase. All users are encouraged to switch to MSMBuilder 3.0. Pre-release versions of MSMBuilder 3.0 were called mixtape.

Versions