msmexplorer.plot_chord¶

msmexplorer.plot_chord(data, ax=None, cmap=None, labels=None, labelsize=12, norm=True, threshold=0.0)¶

Plot chord diagram from an adjacency matrix.

Parameters:

data : ndarray An adjacency matrix ax : matplotlib axis, optional (default: None) Axis to plot on, otherwise uses current axis. cmap : ColorMap, optional (default: None) Optional argument to set the desired colormap labels : list, optional (default: None) A list of str labels labelsize : int, optional (default: 12) Label font size norm : boolean, optional (default: True) Optional argument to normalize data into the [0.0, 1.0] range threshold : float, optional (default: 0.0) Threshold value for an edge to be plotted

Returns:

ax : Axis matplotlib figure axis