plot_angles that plots the distribution of an angle in polar coordinates and
a regular distribution plot (#119).plot_stackdist that plots stacked distributions
(a.k.a joy plots) of data (#102).plot_implied_timescales that accepts a list of msm objects
calculated at different lag times. Returns an implied timescales plot (#90).plot_free_energy now accepts a return_data flag that will return
the data used for the free energy plot(#78).plot_trace2d that plots the time evolution of a 2D numpy array
using a colorbar to map the time (#108).plot_decomp_grid that projects a 1D decompositiononto a 2D grid (#115).
vmin in plot_free_energy is now set to 1E-12 unless otherwise specialized.plot_implied_timescales example to the Fs-Peptide-Example.ipynb notebook. Also added some minor
clarifications and explanations (#107).plot_free_energy now accepts two extra arguments, cbar and
cbar_kwargs to add a colorbar and control its aesthetics (#73).shade option now works for plot_free_energy in the 1D case (#76).ndim > 2 (#70).side_ax in plot_trace is now optional if ax is provided (#54)legend in plot_trace now defaults to True if label is provided,
otherwise false. It previously always defaulted to True (#54).plot_voronoi accepts a new parameter alpha (#55).plot_voronoi will not set axis limits if you specify ax (#55).plot_msm_network and plot_tpaths can now handle lists as
node_color and node_size (#61).extract_palette can now handle rgb tuples and lists (#61).We’re pleased to announce the release of MSMExplorer v0.2.0. The focus of this
release is improving plotting reproducibility and utilities. There is also a
major bugfix for plot_chord and plot_free_energy. We encourage all
users to update to v0.2.0.
darkslategrey has been renamed to carbon (#41).plot_free_energy now supports a random_state option (#40)example_datasets has been added. This allows example datasets to be
pulled from the msmb_data package (#41).make_colormap has been added in msmexplorer.utils. It creates a
linear colormap from a color palette (#40).msme_colors has been added in msmexplorer.utils. It allows any
non-native plotting functions to handle MSMExplorer color strings (#40).plot_free_energy now produces correct 1-D free energy plots (#43).extract_palette is now more robust (#40).plot_chord (#38).