plot_voronoi(kmeans[, ax, obs, …]) |
Plot voronoi regions in a 2D diagram. |
plot_pop_resids(msm, **kwargs) |
Plot residuals between MSM populations and raw counts. |
plot_msm_network(msm[, pos, node_size, …]) |
Plot MSM network diagram. |
plot_timescales(msm[, n_timescales, error, …]) |
Plot MSM timescales spectral diagram. |
plot_free_energy(data[, ax, obs, …]) |
Plot free energy of observable(s) in kilocalories per mole. |
plot_histogram(xs[, bins, range, weights, …]) |
Make a sick corner plot showing the projections of a data set in a multi-dimensional space. |
plot_tpaths(msm, sources, sinks[, …]) |
Plot TPT network diagram. |
plot_chord(data[, ax, cmap, labels, …]) |
Plot chord diagram from an adjacency matrix. |
plot_stackdist(data[, size, aspect, …]) |
Plot stacked distributions (a.k.a Joy plot) of data. |
plot_trace(data[, label, window, ax, …]) |
Plot trace of time-series data. |
utils.extract_palette(color_palette) |
Extract color palette information and return a str/list of hex colors. |
utils.make_colormap(color_palette[, N, gamma]) |
Create a linear colormap from a color palette. |
utils.msme_colors(func) |
A decorator function for enabling MSMExplorer colors. |
