msmexplorer.plot_timescales¶

msmexplorer.plot_timescales(msm, n_timescales=None, error=None, sigma=2, color_palette=None, xlabel=None, ylabel=None, ax=None)¶

Plot MSM timescales spectral diagram.

Parameters:

msm : msmbuilder.msm MSMBuilder MarkovStateModel n_timescales : int, optional Number of timescales to plot error : array-like (float), optional associated errors for each timescales sigma : float, optional significance level for default error bars color_palette: list or dict, optional Color palette to apply xlabel : str, optional x-axis label ylabel : str, optional y-axis label ax : matplotlib axis, optional (default: None) Axis to plot on, otherwise uses current axis.

Returns:

ax : matplotlib axis matplotlib figure axis