msmbuilder.MSMLib.ergodic_trim_indices

msmbuilder.MSMLib.ergodic_trim_indices(counts)[source]

Finds the indices of the largest strongly connected subgraph implied by the transitions in counts.

Parameters:

counts : matrix

The MSM counts matrix

Returns:

states_to_trim : ndarray, int

A list of the state indices that should be trimmed to obtain the

See also

trim_states
func
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