msmbuilder.SCRE.ConvertTIntoK

msmbuilder.SCRE.ConvertTIntoK(T0)[source]

Convert a transition matrix into a rate matrix.

Parameters:

T0 : ndarray

Initial transition matrix

Returns:

K : ndarray

rate matrix

Notes

For best results, use a transition matrix with short lagtime. This follows because one can show that T = exp(K t) ~ I +K t + ...

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