msmbuilder.SCRE.PlotRates

msmbuilder.SCRE.PlotRates(KList, LagTimeList, counts_list, Tau=1)[source]

Plot the intermediate SCRE output to evaluate convergence.

Parameters:

KList : list

List of MLE rate matrices as function of lagtime.

LagTimeList : list

List of lagtimes.

counts_list : ndarray

List of observed count arrays at function of lagtime.

Tau : int, optional

The time unit associated with spacings between lagtimes.
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